metric_PAS_64.zip
回复 2楼 linlulu001
C代码/* cdc chunk */
int file_chunk_cdc(int fd, vector* features) {
unsigned char buf[BUF_MAX_SIZE] = {0};
unsigned char buf_bz[BUF_MAX_SIZE] = {0};
unsigned char block_buf[BLOCK_MAX_SIZE * 2] = {0};
unsigned char last_block_buf[BLOCK_MAX_SIZE * 2] = {0};
char win_buf[BLOCK_WIN_SIZE + 1] = {0};
unsigned char md5_str[33] = {0};
unsigned char adler_pre_char;
unsigned char md5_checksum[32 + 1] = {0};
unsigned int bpos = 0;
unsigned int rwsize = 0, bzsize = 0;
unsigned int exp_rwsize = BUF_MAX_SIZE;
unsigned int head, tail;
unsigned int block_sz = 0, old_block_sz = 0;
unsigned int hkey = 0;
int ret = 0;
feature_t f = 0;
while(rwsize = read(fd, buf + bpos, exp_rwsize))
{
/* last chunk */
if ((rwsize + bpos + block_sz) < BLOCK_MIN_SIZE){
break;
}
head = 0;
tail = bpos + rwsize;
/* avoid unnecessary computation and comparsion */
if (block_sz < (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE))
{
old_block_sz = block_sz;
block_sz = ((block_sz + tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
BLOCK_MIN_SIZE - BLOCK_WIN_SIZE : block_sz + tail -head;
memcpy(block_buf + old_block_sz, buf + head, block_sz - old_block_sz);
head += (block_sz - old_block_sz);
}
while ((head + BLOCK_WIN_SIZE) <= tail)
{
memcpy(win_buf, buf + head, BLOCK_WIN_SIZE);
/*
* Firstly, i think rabinhash is the best. However, it's performance is very bad.
* After some testing, i found ELF_hash is better both on performance and dedup rate.
* So, EFL_hash is default. Now, adler_hash as default.
*/
if (g_rolling_hash)
{
hkey = (block_sz == (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ? adler32_checksum(win_buf, BLOCK_WIN_SIZE) :
adler32_rolling_checksum(hkey, BLOCK_WIN_SIZE, adler_pre_char, buf[head+BLOCK_WIN_SIZE-1]);
}
else
hkey = g_cdc_chunk_hashfunc(win_buf);
/* get a normal chunk */
if ((hkey % g_block_size) == CHUNK_CDC_R)
{
memcpy(block_buf + block_sz, buf + head, BLOCK_WIN_SIZE);
head += BLOCK_WIN_SIZE;
block_sz += BLOCK_WIN_SIZE;
if (block_sz >= BLOCK_MIN_SIZE)
{
md5(block_buf, block_sz, md5_checksum);
f = md5_2_feature(md5_checksum);
VEC_PUSH_BACK(features, &f);
/*
if (0 != (ret = dedup_regfile_block_process(block_buf, block_sz,
md5_checksum, fd_ldata, fd_bdata, pos, block_num, metadata, htable)))
{
perror("dedup_reggile_block_process in file_chunk_cdc");
goto _FILE_CHUNK_CDC_EXIT;
}
*/
block_sz = 0;
}
}
else
{
block_buf[block_sz++] = buf[head++];
/* get an abnormal chunk */
if (block_sz >= BLOCK_MAX_SIZE)
{
md5(block_buf, block_sz, md5_checksum);
f = md5_2_feature(md5_checksum);
VEC_PUSH_BACK(features, &f);
/*
if (0 != (ret = dedup_regfile_block_process(block_buf, block_sz,
md5_checksum, fd_ldata, fd_bdata, pos, block_num, metadata, htable)))
{
perror("dedup_reggile_block_process in file_chunk_cdc");
goto _FILE_CHUNK_CDC_EXIT;
}
*/
block_sz = 0;
}
}
/* avoid unnecessary computation and comparsion */
if (block_sz == 0)
{
block_sz = ((tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
BLOCK_MIN_SIZE - BLOCK_WIN_SIZE : tail - head;
memcpy(block_buf, buf + head, block_sz);
head = ((tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
head + (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE) : tail;
}
adler_pre_char = buf[head -1];
}
/* read expected data from file to full up buf */
bpos = tail - head;
exp_rwsize = BUF_MAX_SIZE - bpos;
adler_pre_char = buf[head -1];
memmove(buf, buf + head, bpos);
}
/* last chunk */
int last_block_len = ((rwsize + bpos + block_sz) >= 0) ? rwsize + bpos + block_sz : 0;
if (last_block_len > 0)
{
memcpy(last_block_buf, block_buf, block_sz);
memcpy(last_block_buf + block_sz, buf, rwsize + bpos);
md5(last_block_buf, last_block_len, md5_checksum);
f = md5_2_feature(md5_checksum);
VEC_PUSH_BACK(features, &f);
}
_FILE_CHUNK_CDC_EXIT:
return 0;
}
改写的java代码
package cn.edu.cust.deduple;
import
import
import
import
import java.nio.ByteBuffer;
import java.nio.channels.FileChannel;
import java.security.NoSuchAlgorithmException;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
import cn.edu.cust.deduple.utils.Checksum;
import cn.edu.cust.deduple.utils.MapUtils;
import cn.edu.cust.deduple.utils.Md5Util;
public class CDC {
private static Map<String, Long> fingerPrints = new HashMap<String, Long>();
static final int BUF_MAX_SZ = 128 * 1024;
static final int BLOCK_MAX_SZ = 4096;
static final int BLOCK_WIN_SZ = 32;
static final int BLOCK_MIN_SZ = 64;
static final int BLOCK_SZ = 4096;
static final int CHUNK_CDC_R = 13;
FileChunks fileChunk(File f) throws IOException {
byte buf[] = new byte[BUF_MAX_SZ];
byte block_buf[] = new byte[BLOCK_MAX_SZ + BLOCK_WIN_SZ];
byte win_buf[] = new byte[BLOCK_WIN_SZ + 1];
byte adler_pre_char = 0;
//unsigned char md5_checksum[16 + 1] = {0};
//unsigned char csum[10 + 1] = {0};
int bpos = 0;
int rwsize = 0;
int exp_rwsize = BUF_MAX_SZ;
int head, tail;
int block_sz = 0, old_block_sz = 0;
long hkey = 0;
//chunk_block_entry chunk_bentry;
long offset = 0;
FileInputStream fin = new FileInputStream(f);
FileChannel fc = fin.getChannel();
ByteBuffer bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
FileChunks fcs = new FileChunks();
fcs.fileName = f.getName();
while((rwsize = fc.read(bb)) >= 0) {
/* last chunk */
//System.out.println("rwsize:" + rwsize);
if ((rwsize + bpos + block_sz) < BLOCK_MIN_SZ)
break;
head = 0;
tail = bpos + rwsize;
/* avoid unnecessary computation and comparsion */
if (block_sz < (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) {
old_block_sz = block_sz;
block_sz = ((block_sz + tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
BLOCK_MIN_SZ - BLOCK_WIN_SZ : block_sz + tail -head;
System.arraycopy(buf, head, block_buf, old_block_sz, block_sz - old_block_sz);
//memcpy(block_buf + old_block_sz, buf + head, block_sz - old_block_sz);
head += (block_sz - old_block_sz);
}
while ((head + BLOCK_WIN_SZ) <= tail) {
System.arraycopy(buf, head, win_buf, 0, BLOCK_WIN_SZ);
//memcpy(win_buf, buf + head, BLOCK_WIN_SZ);
hkey = (block_sz == (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ? Checksum.adler32_checksum(win_buf, BLOCK_WIN_SZ) :
Checksum.adler32_rolling_checksum((int)hkey, BLOCK_WIN_SZ, adler_pre_char, buf[head+BLOCK_WIN_SZ-1]);
//System.out.println("hkey:" + (hkey % BLOCK_SZ));
/* get a normal chunk, write block info to chunk file */
if ((hkey % BLOCK_SZ) == CHUNK_CDC_R) {
//System.out.println(block_sz + BLOCK_WIN_SZ);
System.arraycopy(buf, head, block_buf, block_sz, BLOCK_WIN_SZ);
//memcpy(block_buf + block_sz, buf + head, BLOCK_WIN_SZ);
head += BLOCK_WIN_SZ;
block_sz += BLOCK_WIN_SZ;
if(block_sz > BLOCK_MAX_SZ){
//System.out.println(">4096:" + block_sz);
}
if (block_sz >= BLOCK_MIN_SZ) {
fcs.addChunk(offset, block_sz, block_buf);
/*md5(block_buf, block_sz, md5_checksum);
uint_2_str(adler32_checksum(block_buf, block_sz), csum);
chunk_file_hdr->block_nr++;
chunk_bentry.len = block_sz;
chunk_bentry.offset = offset;
memcpy(chunk_bentry.md5, md5_checksum, 16 + 1);
memcpy(chunk_bentry.csum, csum, 10 + 1);
rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
return -1;*/
offset += block_sz;
block_sz = 0;
}
} else {
block_buf[block_sz++] = buf[head++];
/* get an abnormal chunk, write block info to chunk file */
if (block_sz >= BLOCK_MAX_SZ) {
fcs.addChunk(offset, block_sz, block_buf);
/*md5(block_buf, block_sz, md5_checksum);
uint_2_str(adler32_checksum(block_buf, block_sz), csum);
chunk_file_hdr->block_nr++;
chunk_bentry.len = block_sz;
chunk_bentry.offset = offset;
memcpy(chunk_bentry.md5, md5_checksum, 16+1);
memcpy(chunk_bentry.csum, csum, 10 + 1);
rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
return -1;*/
offset += block_sz;
block_sz = 0;
}
}
/* avoid unnecessary computation and comparsion */
if (block_sz == 0) {
block_sz = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
BLOCK_MIN_SZ - BLOCK_WIN_SZ : tail - head;
System.arraycopy(buf, head, block_buf, 0, block_sz);
//memcpy(block_buf, buf + head, block_sz);
head = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
head + (BLOCK_MIN_SZ - BLOCK_WIN_SZ) : tail;
}
adler_pre_char = buf[head - 1];
}
/* read expected data from file to full up buf */
bpos = tail - head;
exp_rwsize = BUF_MAX_SZ - bpos;
adler_pre_char = buf[head - 1];
System.arraycopy(buf, head, buf, 0, bpos);
//memmove(buf, buf + head, bpos);
bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
}
fin.close();
return fcs;
/*if (rwsize == -1)
return -1;
return 0;*/
}
}