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标题:好揪心啊,有没有大神出手相助一把吗,帮帮找找问题。
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hyj0616
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好揪心啊,有没有大神出手相助一把吗,帮帮找找问题。
metric_PAS_64.zip (224.03 KB)

附上Java代码
package cn.edu.cust.deduple;

import
import
import
import
import java.nio.ByteBuffer;
import java.nio.channels.FileChannel;
import java.security.NoSuchAlgorithmException;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;

import cn.edu.cust.deduple.utils.Checksum;
import cn.edu.cust.deduple.utils.MapUtils;
import cn.edu.cust.deduple.utils.Md5Util;

///**
// * @ClassName: CDC
// * @Description:
// * @author: 王大鸟
// * @date: 2016/5/18
// */
  public class CDC {
//    /**
//     * rabin指纹之除数
//     */
//    private static final int D = 5;
//    /**
//     * rabin指纹之商
//     */
//    private static final int F = 3;
//    /**
//     * 最大值
//     */
//    private static final int MAX = 8 * 1024;
//    /**
//     * 最小值
//     */
//    private static final int MIN = 4 * 1024;
//    /**
//     * 滑动窗口大小
//     */
//    private static final int WINLEN = 4 * 1024;

    private static Map<String, Long> fingerPrints = new HashMap<String, Long>();
   
    static final int BUF_MAX_SZ = 128 * 1024;
    static final int BLOCK_MAX_SZ = 4096;
    static final int BLOCK_WIN_SZ = 32;
    static final int BLOCK_MIN_SZ = 64;
   
    static final int BLOCK_SZ = 4096;
    static final int CHUNK_CDC_R = 13;
   
    FileChunks fileChunk(File f) throws IOException {
        byte buf[] = new byte[BUF_MAX_SZ];
        byte block_buf[] = new byte[BLOCK_MAX_SZ + BLOCK_WIN_SZ];
        byte win_buf[] = new byte[BLOCK_WIN_SZ + 1];
        byte adler_pre_char = 0;
        //unsigned char md5_checksum[16 + 1] = {0};
        //unsigned char csum[10 + 1] = {0};
        int bpos = 0;
        int rwsize = 0;
        int exp_rwsize = BUF_MAX_SZ;
        int head, tail;
        int block_sz = 0, old_block_sz = 0;
        long hkey = 0;
        //chunk_block_entry chunk_bentry;
        long offset = 0;

        FileInputStream fin = new FileInputStream(f);
        FileChannel fc = fin.getChannel();
        ByteBuffer bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
        FileChunks fcs = new FileChunks();
        
        while((rwsize = fc.read(bb)) >= 0) {
            /* last chunk */
            System.out.println("rwsize:" + rwsize);
            if ((rwsize + bpos + block_sz) < BLOCK_MIN_SZ)
                break;

            head = 0;
            tail = bpos + rwsize;
            /* avoid unnecessary computation and comparsion */
            if (block_sz < (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) {
                old_block_sz = block_sz;
                block_sz = ((block_sz + tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                    BLOCK_MIN_SZ - BLOCK_WIN_SZ : block_sz + tail -head;
                System.arraycopy(buf, head, block_buf, old_block_sz, block_sz - old_block_sz);
                //memcpy(block_buf + old_block_sz, buf + head, block_sz - old_block_sz);
                head += (block_sz - old_block_sz);
            }

            while ((head + BLOCK_WIN_SZ) <= tail) {
                System.arraycopy(buf, head, win_buf, 0, BLOCK_WIN_SZ);
                //memcpy(win_buf, buf + head, BLOCK_WIN_SZ);
                hkey = (block_sz == (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ? Checksum.adler32_checksum(win_buf, BLOCK_WIN_SZ) :
                    Checksum.adler32_rolling_checksum((int)hkey, BLOCK_WIN_SZ, adler_pre_char, buf[head+BLOCK_WIN_SZ-1]);
                //System.out.println("hkey:" + (hkey % BLOCK_SZ));
                /* get a normal chunk, write block info to chunk file */
                if ((hkey % BLOCK_SZ) == CHUNK_CDC_R) {
                    //System.out.println(block_sz + BLOCK_WIN_SZ);
                    System.arraycopy(buf, head, block_buf, block_sz, BLOCK_WIN_SZ);
                    //memcpy(block_buf + block_sz, buf + head, BLOCK_WIN_SZ);
                    head += BLOCK_WIN_SZ;
                    block_sz += BLOCK_WIN_SZ;
                    if(block_sz > BLOCK_MAX_SZ){
                        System.out.println(">4096:" + block_sz);
                    }
                    if (block_sz >= BLOCK_MIN_SZ) {
                        fcs.addChunk(offset, block_sz, block_buf);
                        /*md5(block_buf, block_sz, md5_checksum);
                        uint_2_str(adler32_checksum(block_buf, block_sz), csum);
                        chunk_file_hdr->block_nr++;
                        chunk_bentry.len = block_sz;
                        chunk_bentry.offset = offset;
                        memcpy(chunk_bentry.md5, md5_checksum, 16 + 1);
                        memcpy(chunk_bentry.csum, csum, 10 + 1);
                        rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
                        if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
                            return -1;*/
                        offset += block_sz;
                        block_sz = 0;
                    }
                } else {
                    block_buf[block_sz++] = buf[head++];
                    /* get an abnormal chunk, write block info to chunk file */
                    if (block_sz >= BLOCK_MAX_SZ) {
                        fcs.addChunk(offset, block_sz, block_buf);
                        /*md5(block_buf, block_sz, md5_checksum);
                        uint_2_str(adler32_checksum(block_buf, block_sz), csum);
                        chunk_file_hdr->block_nr++;
                        chunk_bentry.len = block_sz;
                        chunk_bentry.offset = offset;
                        memcpy(chunk_bentry.md5, md5_checksum, 16+1);
                        memcpy(chunk_bentry.csum, csum, 10 + 1);
                        rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
                        if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
                            return -1;*/
                        offset += block_sz;
                        block_sz = 0;
                    }
                }

                /* avoid unnecessary computation and comparsion */
                if (block_sz == 0) {
                    block_sz = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                        BLOCK_MIN_SZ - BLOCK_WIN_SZ : tail - head;
                    System.arraycopy(buf, head, block_buf, 0, block_sz);
                    //memcpy(block_buf, buf + head, block_sz);
                    head = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                        head + (BLOCK_MIN_SZ - BLOCK_WIN_SZ) : tail;
                }
                adler_pre_char = buf[head - 1];
            }

            /* read expected data from file to full up buf */
            bpos = tail - head;
            exp_rwsize = BUF_MAX_SZ - bpos;
            adler_pre_char = buf[head - 1];
            System.arraycopy(buf, head, buf, 0, bpos);
            //memmove(buf, buf + head, bpos);
            bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
        }

        fin.close();
        return fcs;
        /*if (rwsize == -1)
            return -1;

        return 0;*/
    }

//    /**
//     * CDC算法实现
//     *
//     * @param file
//     * @throws IOException
//     * @throws NoSuchAlgorithmException
//     */
//    public void process(File file) throws IOException, NoSuchAlgorithmException {
//        byte[] win_buf = new byte[WINLEN];
//        long win_tail = 0;
//        String fingerPrint = null;
//        byte[] buf = new byte[MAX];
//        RandomAccessFile randomAccessFile = new RandomAccessFile(file, "r");
//        long fileLength = randomAccessFile.length();
//
//        while (randomAccessFile.read(win_buf) > 0) {
//            long filePointer = randomAccessFile.getFilePointer();
//            //如果大于最大值
//            if (filePointer - win_tail > MAX) {
//                randomAccessFile.seek(win_tail);
//                randomAccessFile.read(buf);
//                fingerPrint = Md5Util.getMD5(buf);
//                MapUtils.judgeKey(fingerPrints, fingerPrint);
//                win_tail = filePointer;
//                continue;
//            }
//            //满足rabin指纹
//            if ((Arrays.hashCode(win_buf) % D == F) && !((filePointer - win_tail) < MIN)) {
//                offset(randomAccessFile, filePointer, win_tail);
//                win_tail = filePointer;
//            } else if (filePointer == fileLength) {
//                offset(randomAccessFile, filePointer, win_tail);
//                break;
//            } else {
//                randomAccessFile.seek(filePointer - (4 * 1024) + 1);
//            }
//        }
//    }
//
//    /**
//     * 重复代码封装
//     *
//     * @param randomAccessFile
//     * @param filePointer
//     * @param win_tail
//     * @throws IOException
//     * @throws NoSuchAlgorithmException
//     */
//    public void offset(RandomAccessFile randomAccessFile, long filePointer, long win_tail) throws IOException, NoSuchAlgorithmException {
//        byte[] tmpbytes = new byte[Integer.parseInt(String.valueOf(filePointer - win_tail))];
//        randomAccessFile.seek(win_tail);
//        randomAccessFile.read(tmpbytes);
//        String fingerPrint = Md5Util.getMD5(tmpbytes);
//        MapUtils.judgeKey(fingerPrints, fingerPrint);
//    }
//   
//    public static void main(String[] args) {
//        try{
//            CDC cdc = new CDC();
//            FileChunks fcs = cdc.fileChunk(new File("/home/qh/下载/SPAS data set/2.txt"));
//            //fcs.printChunks();
//        }catch(IOException ex){
//            ex.printStackTrace();
//        }
//    }
}


搜索更多相关主题的帖子: package import Java 
2016-08-02 20:20
书生牛犊
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不明所以。。。你到底想干嘛?在《算法》板块问有没有人能看得懂,到这里又贴出一段一些Java语言的。是不是想把两个不同语言写的程式桥接起来?

反正我都下载了,把内容物贴给大家看一眼
图片附件: 游客没有浏览图片的权限,请 登录注册

声明,鉴于帖子没什么实际内容,算法板块的那一贴我已经用权限删除了。还要提问,请带上具体的问题。


[此贴子已经被作者于2016-8-3 04:02编辑过]


φ(゜▽゜*)♪
2016-08-03 04:00
wanglianyi1
Rank: 11Rank: 11Rank: 11Rank: 11
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你应该去java板块提问,还有问问题你要描述清楚你遇到了什么问题,具体点,编译问题还是输出结果不对,或者是其他问题,总之你要说清楚。你这样扔上来一些代码,却不介绍问题,别人无从下手啊。。。难道让别人给你挨个代码敲一遍么,想下这样的话很多人会闲麻烦就不帮你了啊
2016-08-03 08:22
hyj0616
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回复 2楼 书生牛犊
不好意思,我是想模仿CHUNK.C里面CDC分块这一部分写成Java,程序能运行,结果不对。
2016-08-03 08:30
hyj0616
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回复 3楼 wanglianyi1
不好意思,我是想模仿CHUNK.C里面CDC分块这一部分写成Java,程序能运行,结果不对。
2016-08-03 08:30
hyj0616
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C代码

int file_chunk_cdc(int fd, vector* features) {
    unsigned char buf[BUF_MAX_SIZE] = {0};
    unsigned char buf_bz[BUF_MAX_SIZE] = {0};
    unsigned char block_buf[BLOCK_MAX_SIZE * 2] = {0};
    unsigned char last_block_buf[BLOCK_MAX_SIZE * 2] = {0};
    char win_buf[BLOCK_WIN_SIZE + 1] = {0};
    unsigned char md5_str[33] = {0};
    unsigned char adler_pre_char;
    unsigned char md5_checksum[32 + 1] = {0};
    unsigned int bpos = 0;
    unsigned int rwsize = 0, bzsize = 0;
    unsigned int exp_rwsize = BUF_MAX_SIZE;
    unsigned int head, tail;
    unsigned int block_sz = 0, old_block_sz = 0;
    unsigned int hkey = 0;
    int ret = 0;

    feature_t f = 0;
    while(rwsize = read(fd, buf + bpos, exp_rwsize))
    {
        /* last chunk */
        
        if ((rwsize + bpos + block_sz) < BLOCK_MIN_SIZE){
            break;
        }

        head = 0;
        tail = bpos + rwsize;
        /* avoid unnecessary computation and comparsion */
        if (block_sz < (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE))
        {
            old_block_sz = block_sz;
            block_sz = ((block_sz + tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
                    BLOCK_MIN_SIZE - BLOCK_WIN_SIZE : block_sz + tail -head;  
            memcpy(block_buf + old_block_sz, buf + head, block_sz - old_block_sz);
            head += (block_sz - old_block_sz);
        }

        while ((head + BLOCK_WIN_SIZE) <= tail)
        {
            memcpy(win_buf, buf + head, BLOCK_WIN_SIZE);
            /*
             * Firstly, i think rabinhash is the best. However, it's performance is very bad.
             * After some testing, i found ELF_hash is better both on performance and dedup rate.
             * So, EFL_hash is default. Now, adler_hash as default.
             */
            if (g_rolling_hash)
            {
                hkey = (block_sz == (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ? adler32_checksum(win_buf, BLOCK_WIN_SIZE) :
                    adler32_rolling_checksum(hkey, BLOCK_WIN_SIZE, adler_pre_char, buf[head+BLOCK_WIN_SIZE-1]);
            }
            else
                hkey = g_cdc_chunk_hashfunc(win_buf);

            /* get a normal chunk */
            if ((hkey % g_block_size) == CHUNK_CDC_R)
            {
                memcpy(block_buf + block_sz, buf + head, BLOCK_WIN_SIZE);
                head += BLOCK_WIN_SIZE;
                block_sz += BLOCK_WIN_SIZE;
                if (block_sz >= BLOCK_MIN_SIZE)
                {
                    md5(block_buf, block_sz, md5_checksum);
                    f = md5_2_feature(md5_checksum);
                    VEC_PUSH_BACK(features, &f);
                    /*
                    if (0 != (ret = dedup_regfile_block_process(block_buf, block_sz,
                        md5_checksum, fd_ldata, fd_bdata, pos, block_num, metadata, htable)))
                    {
                        perror("dedup_reggile_block_process in file_chunk_cdc");
                        goto _FILE_CHUNK_CDC_EXIT;
                    }
                    */
                    block_sz = 0;
                }
            }
            else
            {
                block_buf[block_sz++] = buf[head++];
                /* get an abnormal chunk */
                if (block_sz >= BLOCK_MAX_SIZE)
                {
                    md5(block_buf, block_sz, md5_checksum);
                    f = md5_2_feature(md5_checksum);
                    VEC_PUSH_BACK(features, &f);
                    /*
                    if (0 != (ret = dedup_regfile_block_process(block_buf, block_sz,
                        md5_checksum, fd_ldata, fd_bdata, pos, block_num, metadata, htable)))
                    {
                        perror("dedup_reggile_block_process in file_chunk_cdc");
                        goto _FILE_CHUNK_CDC_EXIT;
                    }
                    */
                    block_sz = 0;
                }
            }

            /* avoid unnecessary computation and comparsion */
            if (block_sz == 0)
            {
                block_sz = ((tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
                    BLOCK_MIN_SIZE - BLOCK_WIN_SIZE : tail - head;
                memcpy(block_buf, buf + head, block_sz);
                head = ((tail - head) > (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE)) ?
                    head + (BLOCK_MIN_SIZE - BLOCK_WIN_SIZE) : tail;
            }

            adler_pre_char = buf[head -1];
        }

        /* read expected data from file to full up buf */
        bpos = tail - head;
        exp_rwsize = BUF_MAX_SIZE - bpos;
        adler_pre_char = buf[head -1];
        memmove(buf, buf + head, bpos);
    }
    /* last chunk */

    int last_block_len = ((rwsize + bpos + block_sz) >= 0) ? rwsize + bpos + block_sz : 0;
    if (last_block_len > 0)
    {
        memcpy(last_block_buf, block_buf, block_sz);
        memcpy(last_block_buf + block_sz, buf, rwsize + bpos);

        md5(last_block_buf, last_block_len, md5_checksum);
        f = md5_2_feature(md5_checksum);
        VEC_PUSH_BACK(features, &f);
    }

_FILE_CHUNK_CDC_EXIT:
    return 0;
}


}



Java代码

package cn.edu.cust.deduple;

import
import
import
import
import java.nio.ByteBuffer;
import java.nio.channels.FileChannel;
import java.security.NoSuchAlgorithmException;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;

import cn.edu.cust.deduple.utils.Checksum;
import cn.edu.cust.deduple.utils.MapUtils;
import cn.edu.cust.deduple.utils.Md5Util;

  public class CDC {
//    /**
//     * rabin指纹之除数
//     */
//    private static final int D = 5;
//    /**
//     * rabin指纹之商
//     */
//    private static final int F = 3;
//    /**
//     * 最大值
//     */
//    private static final int MAX = 8 * 1024;
//    /**
//     * 最小值
//     */
//    private static final int MIN = 4 * 1024;
//    /**
//     * 滑动窗口大小
//     */
//    private static final int WINLEN = 4 * 1024;

    private static Map<String, Long> fingerPrints = new HashMap<String, Long>();
   
    static final int BUF_MAX_SZ = 128 * 1024;
    static final int BLOCK_MAX_SZ = 4096;
    static final int BLOCK_WIN_SZ = 32;
    static final int BLOCK_MIN_SZ = 64;
   
    static final int BLOCK_SZ = 4096;
    static final int CHUNK_CDC_R = 13;
   
    FileChunks fileChunk(File f) throws IOException {
        byte buf[] = new byte[BUF_MAX_SZ];
        byte block_buf[] = new byte[BLOCK_MAX_SZ + BLOCK_WIN_SZ];
        byte win_buf[] = new byte[BLOCK_WIN_SZ + 1];
        byte adler_pre_char = 0;
        //unsigned char md5_checksum[16 + 1] = {0};
        //unsigned char csum[10 + 1] = {0};
        int bpos = 0;
        int rwsize = 0;
        int exp_rwsize = BUF_MAX_SZ;
        int head, tail;
        int block_sz = 0, old_block_sz = 0;
        long hkey = 0;
        //chunk_block_entry chunk_bentry;
        long offset = 0;

        FileInputStream fin = new FileInputStream(f);
        FileChannel fc = fin.getChannel();
        ByteBuffer bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
        FileChunks fcs = new FileChunks();
        
        while((rwsize = fc.read(bb)) >= 0) {
            /* last chunk */
            System.out.println("rwsize:" + rwsize);
            if ((rwsize + bpos + block_sz) < BLOCK_MIN_SZ)
                break;

            head = 0;
            tail = bpos + rwsize;
            /* avoid unnecessary computation and comparsion */
            if (block_sz < (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) {
                old_block_sz = block_sz;
                block_sz = ((block_sz + tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                    BLOCK_MIN_SZ - BLOCK_WIN_SZ : block_sz + tail -head;
                System.arraycopy(buf, head, block_buf, old_block_sz, block_sz - old_block_sz);
                //memcpy(block_buf + old_block_sz, buf + head, block_sz - old_block_sz);
                head += (block_sz - old_block_sz);
            }

            while ((head + BLOCK_WIN_SZ) <= tail) {
                System.arraycopy(buf, head, win_buf, 0, BLOCK_WIN_SZ);
                //memcpy(win_buf, buf + head, BLOCK_WIN_SZ);
                hkey = (block_sz == (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ? Checksum.adler32_checksum(win_buf, BLOCK_WIN_SZ) :
                    Checksum.adler32_rolling_checksum((int)hkey, BLOCK_WIN_SZ, adler_pre_char, buf[head+BLOCK_WIN_SZ-1]);
                //System.out.println("hkey:" + (hkey % BLOCK_SZ));
                /* get a normal chunk, write block info to chunk file */
                if ((hkey % BLOCK_SZ) == CHUNK_CDC_R) {
                    //System.out.println(block_sz + BLOCK_WIN_SZ);
                    System.arraycopy(buf, head, block_buf, block_sz, BLOCK_WIN_SZ);
                    //memcpy(block_buf + block_sz, buf + head, BLOCK_WIN_SZ);
                    head += BLOCK_WIN_SZ;
                    block_sz += BLOCK_WIN_SZ;
                    if(block_sz > BLOCK_MAX_SZ){
                        System.out.println(">4096:" + block_sz);
                    }
                    if (block_sz >= BLOCK_MIN_SZ) {
                        fcs.addChunk(offset, block_sz, block_buf);
                        /*md5(block_buf, block_sz, md5_checksum);
                        uint_2_str(adler32_checksum(block_buf, block_sz), csum);
                        chunk_file_hdr->block_nr++;
                        chunk_bentry.len = block_sz;
                        chunk_bentry.offset = offset;
                        memcpy(chunk_bentry.md5, md5_checksum, 16 + 1);
                        memcpy(chunk_bentry.csum, csum, 10 + 1);
                        rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
                        if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
                            return -1;*/
                        offset += block_sz;
                        block_sz = 0;
                    }
                } else {
                    block_buf[block_sz++] = buf[head++];
                    /* get an abnormal chunk, write block info to chunk file */
                    if (block_sz >= BLOCK_MAX_SZ) {
                        fcs.addChunk(offset, block_sz, block_buf);
                        /*md5(block_buf, block_sz, md5_checksum);
                        uint_2_str(adler32_checksum(block_buf, block_sz), csum);
                        chunk_file_hdr->block_nr++;
                        chunk_bentry.len = block_sz;
                        chunk_bentry.offset = offset;
                        memcpy(chunk_bentry.md5, md5_checksum, 16+1);
                        memcpy(chunk_bentry.csum, csum, 10 + 1);
                        rwsize = write(fd_chunk, &chunk_bentry, CHUNK_BLOCK_ENTRY_SZ);
                        if (rwsize == -1 || rwsize != CHUNK_BLOCK_ENTRY_SZ)
                            return -1;*/
                        offset += block_sz;
                        block_sz = 0;
                    }
                }

                /* avoid unnecessary computation and comparsion */
                if (block_sz == 0) {
                    block_sz = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                        BLOCK_MIN_SZ - BLOCK_WIN_SZ : tail - head;
                    System.arraycopy(buf, head, block_buf, 0, block_sz);
                    //memcpy(block_buf, buf + head, block_sz);
                    head = ((tail - head) > (BLOCK_MIN_SZ - BLOCK_WIN_SZ)) ?
                        head + (BLOCK_MIN_SZ - BLOCK_WIN_SZ) : tail;
                }
                adler_pre_char = buf[head - 1];
            }

            /* read expected data from file to full up buf */
            bpos = tail - head;
            exp_rwsize = BUF_MAX_SZ - bpos;
            adler_pre_char = buf[head - 1];
            System.arraycopy(buf, head, buf, 0, bpos);
            //memmove(buf, buf + head, bpos);
            bb = ByteBuffer.wrap(buf, bpos, exp_rwsize);
        }

        fin.close();
        return fcs;
        /*if (rwsize == -1)
            return -1;

        return 0;*/
    }
}


[此贴子已经被作者于2016-8-3 08:33编辑过]

2016-08-03 08:32
快速回复:好揪心啊,有没有大神出手相助一把吗,帮帮找找问题。
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